Modelica'2009 Paper Abstract

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Brugård, Jan (MathCore Engineering AB), Cascante, Marta (Universitat de Barcelona), Cedersund, Gunnar (Linköping University), Selivanov, Vitaly (University of Barcelona), Nyman, Elin (Linköping University), Hedberg, Daniel (MathCore Engineering AB), Gómez-Garrido, Alex (Universitat Pompeu Fabra), Maier, Dieter (Biomax Informatics AG), Strålfors, Peter (Linköping University)

Creating a Bridge between Modelica and the Systems Biology Community

Scheduled for presentation during the Regular Session "Hybrid systems, Systems Biology and Biological Models" (TuBT4), Tuesday, September 22, 2009, 10:30−10:55, Villa Sucota

7th International Modelica Conference, September 20-22, 2009, Grand Hotel di Como, Como, Italy

This information is tentative and subject to change. Compiled on December 7, 2019

Keywords Modelica tools

Abstract

The Systems Biology Markup Language (SBML) is the leading modelling language within systems biol-ogy. It is a computer-readable format for represent-ing models of biochemical reaction networks in software. SBML has been evolving since mid-2000 thanks to an international community of software developers and users. At the same time the Modelica language has evolved as the leading object-oriented modelling language for convenient, component-oriented modelling of complex physical systems.

As a part of the EC-funded BioBridge project Math-Core has developed the Modelica library BioChem and the MathModelica systems Biology toolbox. With the release of version 1.0 of the BioChem li-brary and the MathModelica Systems Biology tool-box it is now possible to import and export from Modelica to SBML. The toolbox also allows to pub-lish the Modelica models as interactive HTML pages, with biochemical and experimental enzyme characterizations derived from the BioBridge portal and BioXM knowledge management environment.

 

 

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